島根県産の昆虫や水生生物等を対象とした分子系統やDNAバーコードに関わる文献目録（作成中）
というタイトルで文献のリストを作成しているのだが、忘れたりしているものもあって、なかなか思い出せない。全くリサーチできていないものもありそう。
データベースから産地で検索とかできたらいいのに。
昆虫類
トンボ目
Hayashi, F., S. Dobata and R. Futahashi (2004) Macro- and microscale distribution patterns of two closely related Japanese Mnais species inferred from nuclear ribosomal DNA, ITS sequences and morphology (Zygoptera: Calopterygidae). Odonatologica, 33: 399–412.／カワトンボ属．
Hayashi, F., S. Dobata, and R. Futahashi (2005) Disturbed population genetics: suspected introgressive hybridization between two Mnais damselfly species (Odonata). Zoological Science, 22(8): 869–881. ／カワトンボ属．
Damgaard, J., F. F. F. Moreira, M. Hayashi, T. A. Weir and H. Zettel (2012) Molecular phylogeny of the pond treaders (Insecta: Hemiptera: Heteroptera: Mesoveliidae), discussion of the fossil record and a checklist of species assigned to the family. Insect Systematics & Evolution, 43(2012): 175-212.／出雲市産ウミミズカメムシ。
Sareein, N., J.-H. Kang, S.-W. Jung, C. Phalaraksh and Y.-J. Bae (2019) Taxonomic review and distribution of giant water bugs (Hemiptera: Belostomatidae: Lethocerinae) in the Palearctic, Oriental, and Australian regions. Entomological Research, 49: 462–473.／Japan, Shimane, 19 X 2006 (GenBank association no. MK926431).
コウチュウ目
ハンミョウ科
Satoh, A., T. Sota, T. Ueda, Y. Enokido, J. C. Paik and M. Hori (2004) Evolutionary history of coastal tiger beetles in Japan based on a comparative phylogeography of four species. Molecular Ecology, 13: 3057–3069.／ハラビロハンミョウ（浜田市産）
Sota, T., H. Liang, Y. Enokido and M. Hori (2011) Phylogeny and divergence time of island tiger beetles of the genus Cylindera (Coleoptera: Cicindelidae) in East Asia. Biological Journal of the Linnean Society, 102: 715–727.エリザハンミョウ．
オサムシ科
Su, S.-Z., O. Tominaga, M. Okamoto and S. Osawa (1998) Origin and diversification of hindwingless Damaster ground beetles within the Japanese islands as deduced from mitochondrial ND5 gene sequences (Coleoptera, Carabidae). Molecular Biology and Evolution, 15: 1026–1039.／マイマカブリ．
曽田貞滋（2003）ミトコンドリアDNA分析に基づく西日本のオオオサムシ亜属の系統地理学的研究．ホシザキグリーン財団研究報告, (6): 153-166.
Sota, T. and R. Ishikawa (2004) Phylogeny and life-history evolution in Carabus (subtribe Carabina: Coleoptera, Carabidae) based on sequences of two nuclear genes. Biological Journal of the Linnean Society, 81: 135–149.
Sota, T. and N. Nagata (2008) Diversification in a fluctuating island setting: rapid radiation of Ohomopterus ground beetles in the Japanese Islands. Philosophical Transactions of the Royal Society B: Biological Sciences, 363: 3377–3390.
ガムシ科
林 成多・大井和之（2020）日本産マルガムシ属のミトコンドリアCOI遺伝子解析．ホシザキグリーン財団研究報告, (23): 93－98.
ダルマガムシ
Ribera, I., A. Castro, J. A. Díaz, J. Garrido, A. Izquierdo, M. A. Jäch and L. F. Valladares (2011) The geography of speciation in narrow-range endemics of the ‘Haenydra’ lineage (Coleoptera, Hydraenidae, Hydraena). Journal of Biogeography, 38(3): 502–516.／模式産地のクニビキアカダルマガムシ
Kubota, K., Y. Nagahata, H. Ikeda, N. Kubota, H. Otobe and K. Umetsu (2011) Diversification process of stag beetles belonging to the genus Platycerus Geoffroy (Coleoptera: Lucanidae) in Japan based on nuclear and mitochondrial genes. Entomological Science, 14: 411–427.／キンキコルリクワガタ．
ドロムシ科
Kodada J., D. Selnekovič, M. A. Jäch, K. Goffová and P. Vďačný (2021) Taxonomic revision of the genus ElmomorphusSharp, 1888 I. Japanese and Korean species (Coleoptera: Dryopidae). European Journal of Taxonomy, 758: 97– 121.／出雲市西谷町および松江市八雲町産のムナビロツヤドロムシを分析している．
ヒメドロムシ科
Hayashi, M. and T. Sota (2010) Identification of elmid larvae (Coleoptera: Elmidae) from Sanin District of Honshu, Japan, based on mitochondrial DNA sequencesens. Entomological Science, 13: 417–424.
Hayashi, M., S. D. Song and T. Sota (2013) Patterns of hind-wing degeneration in Japanese riffle beetles (Coleoptera: Elmidae). European Journal of Entomology, 110(4): 689–697.
林 成多・曽田貞滋（2015）クロサワドロムシ Neoriohelmis kurosawai Nomura の幼虫 (コウチュウ目ヒメドロムシ科)．ホシザキグリーン財団研究報告, (18): 143–150.
Hayashi, M., Y. Kamite, T. Kobayashi and T. Sota (2016) Description of larvae of genera Stenelmis, Ordobrevia and Nomuraelmis (Coleoptera: Elmidae: Elminae) of Japan with their molecular taxonomy. Zootaxa, 4178 (4): 451–480.
Hayashi, M., H. Yoshitomi, Y. Kamite, T. Kobayashi and T. Sota (2019) Description of adults and larvae of Orientelmis parvula (Nomura & Baba, 1961) (Coleoptera: Elmidae) with their molecular phylogenetic analysis. Zootaxa,4568(3): 483–500.
Kobayashi, T., M. Hayashi, Y. Kamite and T. Sota (2021) Molecular phylogeny of Elmidae (Coleoptera: Byrrhoidea) with a focus on Japanese species: implications for intrafamilial classification. Systematic Entomology, 46: 870–886.
ヒラタドロムシ科
Hayashi, M. and T. Sota (2008) Discrimination of two Japanese water pennies, Eubrianax granicollis Lewis and E. ramicornis Kiesenwetter (Coleoptera: Psephenidae), based on laboratory rearing and molecular taxonomy. Entomological Science, 11(3): 349-357. ／マルヒラタドロムシとクシヒゲマルヒラタドロムシ．
Hayashi, M., S. D. Song and T. Sota (2012) Molecular phylogeny and divergence time of the water penny genus Eubrianax (Coleoptera: Psephenidae) in Japan. Entomological Science, 15: 314–323.／マルヒラタドロムシ属．
ホタル科
吉川貴浩・井出幸介・窪田康男・中村好宏・武部 寛・草桶秀夫（2001）ミトコンドリア ND5 遺伝子の塩基配列から推定されたゲンジボタルの種内変異と分子系統．昆蟲ニューシリーズ, 4(4): 117–127.／Nakasuji, Oki; Mitoya; Noriyoshi, Matueの3地点．
カミキリムシ科
中峰 空（2005）中国地方におけるセダカコブヤハズカミキリの分子系統解析．ホシザキグリーン財団研究報告, (8): 71–76.
Nakamine, S. and M. Takeda (2008) Molecular phylogeny and phylogeography of flightless beetles Parechthistatus gibber and Hayashiechthistatus inexpectus (Coleoptera: Cerambycidae) inferred from mitochondrial COI gene sequences. Entomological Science, 11: 239–246.／セダカコブヤハズカミキリ．
ゾウムシ科
Yamashita, Y., D. Waku, N. Kobayashi, T. Ishikawa and H. Kojima (2019) Population structure of two flightless weevils of genus Scepticus Roelofs (Coleoptera, Curculionidae) with seashore habitat in Japan. Zoological Science, 36: 82–94.／海浜性のトビイロヒョウタンゾウムシおよびスナムグリヒョウタンゾウムシ．
チョウ目
上田昇平・潘 宇・小薮紅仁・占部由佳・淀江賢一郎・宇佐美真一（2005）隠岐と島根県本土に生息するチョウ類の地理変異に関する系統学的解析．ホシザキグリーン財団研究報告, (8): 25–30.
ハエ目
Sota, T., P. Belton, M. Tseng, H.-S. Yong and M. Mogi (2015) Phylogeography of the coastal mosquito Aedes togoi across climatic zones: testing an anthropogenic dispersal hypothesis. PLoS ONE, 10, e0131230. doi:10.1371/journal.pone.0131230／トウゴウヤブカ．
ハチ目
Kawazoe, K., A. Kawakita, Y. Kameda and M. Kato (2008) Redundant species, cryptic host-associated divergence, and secondary shift in Sennertia mites (Acari: Chaetodactylidae) associated with four large carpenter bees (Hymenoptera: Apidae: Xylocopa) in the Japanese island arc. Molecular Phylogenetics and Evolution, 49: 503–513. ／キムネクマバチと寄生ダニ（隠岐の西ノ島産を分析）．
昆虫以外
軟体動物
西 浩孝・曽田貞滋（2005）ミトコンドリアDNA分析に基づく中国地方のマイマイ属の系統地理学的研究．ホシザキグリーン財団研究報告, (8): 185–196.
Miura, O., M. Urabe, H. Mori and S. Chiba (2020) Ancient drainage networks mediated a large-scale genetic introgression in the East Asian freshwater snails. Ecology and Evolution, 10: 8186–8196.／カワニナ類．
Niikura, M., M. Honda and K. Yahata (2015) Phylogeography of Semiterrestrial Isopod, Tylos granuliferus, on East Asian Coasts. Zoological Science, 32: 105–113.／ハマダンゴムシ．
Shih H.-T., Y. Cai, N. Niwa and Y. Nakahara (2017) A new species of land-locked freshwater shrimp, Neocaridina ikiensis (Decapoda: Caridea: Atyidae), is described from Iki Island, Kyushu, Japan, based on morphological and molecular evidence. Zoological Studies, 56: 30 doi:10.6620/ZS.2017. 56–30.／カワリヌマエビ属．
淡水魚類
Sota, T., T. Mukai, T. Shinozaki, H. Sato and K. Yodoe (2005) Genetic differentiation of the gobies Gymnogobius castaneus and G. taranetzi in the region surrounding the Sea of Japan as inferred from a mitochondrial gene genealogy. Zoological Science, 22: 87–93.／シンジコハゼ．
Morishima, K., Y. Nakamura-Shiokawa, E. Bando, Y.-J. Li, A. Boron, M. M. R. Khan and K. Arai (2008) Cryptic clonal lineages and genetic diversity in the loach Misgurnus anguillicaudatus (Teleostei: Cobitidae) inferred from nuclear and mitochondrial DNA analyses. Genetica, 132: 159–171.／ドジョウ．
Kitamura, J., N. Nagata, J. Nakajima and T. Sota (2012) Divergence of ovipositor length and egg shape in a brood parasitic bitterling fish through the use of different mussel hosts. Journal of Evolutionary Biology, 25: 566–573.／ミナミアカヒレタビラ．
Komiya, T., S. Fujita-Yanagibayashi and K. Watanabe (2014) Multiple colonizations of Lake Biwa by Sarcocheilichthysfishes and their population history. Environmental Biology of Fishes, 97: 741–755.／ヒガイ．
Tominaga, K., J. Nakajima and K. Watanabe (2016) Cryptic divergence and phylogeography of the pike gudgeon Pseudogobio esocinus (Teleostei: Cyprinidae): a comprehensive case of freshwater phylogeography in Japan. Ichthyological Research, 63: 79–93.／カマツカ．
Nakagawa, H., S. Seki, T. Ishikawa and K. Watanabe (2016) Genetic population structure of the Japanese torrent catfish Liobagrus reinii (Amblycipitidae) inferred from mitochondrial cytochrome b variations. chthyological Research, 63: 333–346.／アカザ．
林 成多・大井和之（2019）島根県東部赤川流域（斐伊川水系）のドジョウを対象としたミドコンドリアDNAハプロタイプの分析結果（予報）．ホシザキグリーン財団研究報告, (22): 241–244.
Tominaga, K., N. Nagata, J. Kitamura, K. Watanabe and T. Sota (2020) Phylogeography of the bitterling Tanakia lanceolata (Teleostei: Cyprinidae) in Japan inferred from mitochondrial cytochrome b gene sequences. Ichthyological Research, 67: 105–116.／ヤリタナゴ．
両生類
Matsui, M., K. Nishikawa, T. Utsunomiya and S. Tanabe (2006) Geographic allozyme variation in the Japanese clouded salamander, Hynobius nebulosus (Amphibia: Urodela). Biological Journal of the Linnean Society, 89: 311–330.／カスミサンショウウオ類．
Matsui, M., K. Nishikawa, Y. Misawa and S. Tanabe (2007) Systematic relationships of Hynobius okiensis among Japanese Salamanders (Amphibia: Caudata). Zoological Science, 24: 746–751. ／オキサンショウウオ．
Eto, K., M. Matsui, T. Sugahara and T. Tanaka-Ueno (2012) Highly complex mitochondrial DNA genealogy in an endemic Japanese subterranean breeding brown frog Rana tagoi (Amphibia, Anura, Ranidae). Zoological Science, 29: 662–671. ／タゴガエル・オキタゴガエル．
Tominaga, A., M. Matsui, N. Yoshikawa, K. Nishikawa, T. Hayashi, Y. Misawa, S. Tanabe and H. Ota (2013) Phylogeny and historical demography of Cynops pyrrhogaster (Amphibia: Urodela): Taxonomic relationships and distributional changes associatedwith climatic oscillations. Molecular Phylogenetics and Evolution, 66: 654–667.／アカハライモリ．
Matsui, M., H. Okawa, K. Nishikawa, G. Aoki, K. Eto, N. Yoshikawa, S.Tanabe, Y. Misawa, A. Tominaga (2019) Systematics of the widely distributed Japanese clouded salamander, Hynobius nebulosus (Amphibia: Caudata: Hynobiidae), and its closest relatives. Current Herpetology, 38: 32–90. ／カスミサンショウウオ類．
林 成多・大井和之（2020）島根県東部における止水性サンショウウオ類の分子系統解析．ホシザキグリーン財団研究報告, (23): 99–104.
林 成多・大井和之・八幡浩二・佐藤仁志（2021）隠岐島後におけるオキサンショウウオの分子系統解析．ホシザキグリーン財団研究報告, (24): 65–67.
Sugawara, H., T. Iwata, H. Yamashita and M. Nagano (2021) Taxonomic reassessment of the Izumo Lineage of Hynobius utsunomiyaorum: description of a new species from Chugoku, Japan. Animals, 11(8), 2187; https://doi.org/10.3390/ani11082187 ／イズモサンショウウオの記載．
